{ "_id": "6aae48ce3d719c1f8407aabc", "Package": "biopixR", "Title": "Extracting Insights from Biological Images", "Version": "1.2.0", "Authors@R": "c(person(\"Tim\", \"Brauckhoff\",\nemail = \"brauctile@disroot.org\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0002-0142-7017\")),\nperson(\"Stefan\", \"Roediger\",\nemail = \"stefan.roediger@b-tu.de\",\ncomment = c(ORCID = \"0000-0002-1441-6512\"),\nrole = c(\"ctb\")),\nperson(\"Coline\", \"Kieffer\",\nemail = \"coline.kieffer@espci.fr\",\nrole = c(\"ctb\")))", "Description": "Combines the 'magick' and 'imager' packages to streamline\nimage analysis, focusing on feature extraction and\nquantification from biological images, especially\nmicroparticles. By providing high throughput pipelines and\nclustering capabilities, 'biopixR' facilitates efficient\ninsight generation for researchers (Schneider J. et al. (2019)\n).", "License": "LGPL (>= 3)", "VignetteBuilder": "knitr", "BuildVignettes": "true", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "LazyData": "true", "LazyLoad": "yes", "NeedsCompilation": "no", "Language": "en-US", "URL": "https://github.com/Brauckhoff/biopixR", "BugReports": "https://github.com/Brauckhoff/biopixR/issues", "Config/pak/sysreqs": "libfftw3-dev libglpk-dev libmagick++-dev gsfonts\nlibicu-dev libjpeg-dev libpng-dev libtiff-dev libxml2-dev\nlibssl-dev libx11-dev", "Repository": "https://brauckhoff.r-universe.dev", "Date/Publication": "2026-06-21 14:22:01 UTC", "RemoteUrl": "https://github.com/brauckhoff/biopixr", "RemoteRef": "HEAD", "RemoteSha": "cb78e07c880f5576346f8641e924a1ea9aa71653", "Packaged": { "Date": "2026-09-19 08:29:08 UTC", "User": "root" }, "Author": "Tim Brauckhoff [aut, cre] (ORCID:\n),\nStefan Roediger [ctb] (ORCID: ),\nColine Kieffer [ctb]", "Maintainer": "Tim Brauckhoff ", "_user": "brauckhoff", "_type": "src", "_file": "biopixR_1.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/c6c7eee32e0fcac789110e62e7d23010cbd6d49c84d80a2d2323c2f94d25ecc6", "_filesize": 3491955, "_sha256": "c6c7eee32e0fcac789110e62e7d23010cbd6d49c84d80a2d2323c2f94d25ecc6", "_expires": "2026-12-28T08:33:16.000Z", "_created": "2026-09-19T08:29:08.000Z", "_published": "2026-09-19T08:33:18.742Z", "_jobs": [ { "job": 105868523156, "time": 163, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10581140309" }, { "job": 105868523209, "time": 155, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10580464521" }, { "job": 105868523183, "time": 188, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10581415018" }, { "job": 105868523168, "time": 194, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10581115454" }, { "job": 105868081499, "time": 226, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10581265099" }, { "job": 105868523149, "time": 143, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10580459619" }, { "job": 105868523228, "time": 104, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10581330059" }, { "job": 105868523255, "time": 95, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10581230225" }, { "job": 105868523269, "time": 95, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10580384905" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377", "_status": "success", "_upstream": "https://github.com/brauckhoff/biopixr", "_commit": { "id": "cb78e07c880f5576346f8641e924a1ea9aa71653", "author": "Brauckhoff <121032772+Brauckhoff@users.noreply.github.com>", "committer": "GitHub ", "message": "CI: only GPareto for macOS throws error", "time": 1782051721 }, "_maintainer": { "name": "Tim Brauckhoff", "email": "brauctile@disroot.org", "login": "brauckhoff", "orcid": "0009-0002-0142-7017", "description": "", "uuid": 121032772 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "imager", "role": "Depends" }, { "package": "magick", "role": "Depends" }, { "package": "data.table", "role": "Imports" }, { "package": "cluster", "role": "Imports" }, { "package": "tcltk", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "doParallel", "role": "Suggests" }, { "package": "kohonen", "role": "Suggests" }, { "package": "imagerExtra", "role": "Suggests" }, { "package": "GPareto", "role": "Suggests" }, { "package": "foreach", "role": "Suggests" } ], "_owner": "brauckhoff", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-25", "n": 3 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "brauckhoff", "count": 116, "uuid": 121032772 }, { "user": "devsjr", "count": 75, "uuid": 5408324 }, { "user": "michaelchirico", "count": 2, "uuid": 7606389 } ], "_userbio": { "uuid": 121032772, "type": "user", "name": "Brauckhoff", "followers": 2 }, "_downloads": { "count": 463, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/biopixR" }, "_devurl": "https://github.com/brauckhoff/biopixr", "_searchresults": 29, "_rbuild": "4.6.1", "_assets": [ "extra/biopixR.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/brauckhoff/biopixr", "_realowner": "brauckhoff", "_cranurl": true, "_releases": [ { "version": "0.2.4", "date": "2024-03-25" }, { "version": "1.0.0", "date": "2024-06-03" }, { "version": "1.1.0", "date": "2024-06-24" }, { "version": "1.2.0", "date": "2024-11-14" } ], "_exports": [ "adaptiveInterpolation", "changePixelColor", "edgeDetection", "fillLineGaps", "haralickCluster", "imgPipe", "importImage", "interactive_objectDetection", "interpolatePixels", "objectDetection", "proximityFilter", "resultAnalytics", "scanDir", "shapeFeatures", "sizeFilter" ], "_datasets": [ { "name": "beads", "title": "Image of microbeads", "object": "beads", "class": [ "cimg", "imager_array", "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "beads_large1", "title": "Image of microbeads", "object": "beads_large1", "class": [ "cimg", "imager_array", "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "beads_large2", "title": "Image of microbeads", "object": "beads_large2", "class": [ "cimg", "imager_array", "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "droplet_beads", "title": "Image of microbeads in luminescence channel", "object": "droplet_beads", "class": [ "cimg", "imager_array", "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "droplets", "title": "Droplets containing microbeads", "object": "droplets", "class": [ "cimg", "imager_array", "numeric" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "adaptiveInterpolation", "title": "Connects Line Ends with the nearest labeled region", "topics": [ "adaptiveInterpolation" ] }, { "page": "beads", "title": "Image of microbeads", "topics": [ "beads" ] }, { "page": "beads_large1", "title": "Image of microbeads", "topics": [ "beads_large1" ] }, { "page": "beads_large2", "title": "Image of microbeads", "topics": [ "beads_large2" ] }, { "page": "changePixelColor", "title": "Change the color of pixels", "topics": [ "changePixelColor" ] }, { "page": "droplet_beads", "title": "Image of microbeads in luminescence channel", "topics": [ "droplet_beads" ] }, { "page": "droplets", "title": "Droplets containing microbeads", "topics": [ "droplets" ] }, { "page": "edgeDetection", "title": "Canny edge detector", "topics": [ "edgeDetection" ] }, { "page": "fillLineGaps", "title": "Reconnecting discontinuous lines", "topics": [ "fillLineGaps" ] }, { "page": "haralickCluster", "title": "k-medoids clustering of images according to the Haralick features", "topics": [ "haralickCluster" ] }, { "page": "imgPipe", "title": "Image analysis pipeline", "topics": [ "imgPipe" ] }, { "page": "importImage", "title": "Import an Image File", "topics": [ "importImage" ] }, { "page": "interactive_objectDetection", "title": "Interactive object detection", "topics": [ "interactive_objectDetection" ] }, { "page": "interpolatePixels", "title": "Pixel Interpolation", "topics": [ "interpolatePixels" ] }, { "page": "objectDetection", "title": "Object detection", "topics": [ "objectDetection" ] }, { "page": "proximityFilter", "title": "Proximity-based exclusion", "topics": [ "proximityFilter" ] }, { "page": "resultAnalytics", "title": "Result Calculation and Summary", "topics": [ "resultAnalytics" ] }, { "page": "scanDir", "title": "Scan Directory for Image Analysis", "topics": [ "scanDir" ] }, { "page": "shapeFeatures", "title": "Extraction of Shape Features", "topics": [ "shapeFeatures" ] }, { "page": "sizeFilter", "title": "Size-based exclusion", "topics": [ "sizeFilter" ] } ], "_readme": "https://github.com/brauckhoff/biopixr/raw/HEAD/README.md", "_rundeps": [ "bmp", "cli", "cluster", "cpp11", "curl", "data.table", "digest", "downloader", "glue", "igraph", "imager", "jpeg", "lattice", "lifecycle", "magick", "magrittr", "Matrix", "pkgconfig", "png", "purrr", "Rcpp", "readbitmap", "rlang", "stringi", "stringr", "tiff", "vctrs" ], "_vignettes": [ { "source": "biopixR.Rmd", "filename": "biopixR.html", "title": "biopixR - Introduction", "author": "Tim Brauckhoff and Stefan Rödiger", "engine": "knitr::rmarkdown", "headings": [ "Getting started", "First step: Import of an image", "Detecting objects in an image", "Filter microbeads according to size and proximity", "Displaying results", "Individual usage of the filter functions", "Case study I: Microbeads in droplets - Dealing with discontinous edges", "Closing gaps in droplet contours", "Animated visualization of the fillLineGaps algorithm" ], "created": "2023-12-06 14:47:42", "modified": "2024-07-04 15:35:27", "commits": 38 } ], "_score": 5.2405492482825995, "_indexed": true, "_nocasepkg": "biopixr", "_universes": [ "brauckhoff" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-09-19T08:31:42.000Z", "distro": "resolute", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/5a4c7307912f9e2ca832848fd7d808ecf899d427a52a82a8d47f8c5f06ffdb4b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.6.1", "os": "linux", "version": "1.2.0", "date": "2026-09-19T08:31:38.000Z", "distro": "resolute", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/1b80933e46b598db5200f5340091b3677466dd0e16e804bf55cb02f6df25dd48", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-09-19T08:31:53.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/01c47f1d9018b3a219038175453aec326205ec0df0533097c71154e061a39374", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.6.1", "os": "mac", "version": "1.2.0", "date": "2026-09-19T08:31:35.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/6eb29d178008d869b8da0d5a44671a8b02731d993cef9388f30987dce53e473d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0", "date": "2026-09-19T08:31:53.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/7bff1d6e52a4129287219958281acdeb0d6fa21e71d9f97f16e8808917e4c861", "status": "success", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.7.0", "os": "win", "version": "1.2.0", "date": "2026-09-19T08:30:35.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/5966edf052a7fd6f8201f8b38086eec481d2ba70c5572a116d3d92657d88ad39", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.5.3", "os": "win", "version": "1.2.0", "date": "2026-09-19T08:30:30.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/7b908f281e3f51a52ae9ee20bac46940ed40c6d3ebed6419d43eadef4bec5e4e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" }, { "r": "4.6.1", "os": "win", "version": "1.2.0", "date": "2026-09-19T08:30:30.000Z", "commit": "cb78e07c880f5576346f8641e924a1ea9aa71653", "fileid": "https://r2.ropensci.org/43202f9771ea642be2763c20111b6f7eabe0dee40c492a7a9c5d14f1d81e9f23", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/brauckhoff/actions/runs/35431959377" } ] }